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Peptide-MHC-targeted retroviruses enable in vivo expansion and gene delivery to tumor-specific T cells

12 dec. 2024

Xu et al. (BioRxiv)

DOI: 10.1101/2024.09.18.613594

Keywords:

  • CD8+ T lymphocytes

  • Major Histocompatibility Complex I

  • Retrovirus


Main findings

Pseudotyping  a fusogen-displaying murine leukemia gammaretrovirus (MuLV) with class I  MHC H2-Db single chain trimer (SCT) enables targeting of  antigen-specific T cells for gene cargo delivery, activation and  expansion. The authors used TRP1high TCR transnuclear mice as a source  of CD8 T cells that recognize tyrosine-related protein 1 (TRP1), a  well-described melanoma antigen. Administering a virus pseudotyped with a  SCT carrying a TRP1 mimitope (termed “A1”) together with an ecotropic  envelope protein (Eco), enabled cognate T cell activation and efficient  delivery of a ZsGreen cargo to target cells within a polyclonal CD8 cell  population in vitro Specific  cargo delivery, activation and expansion were achieved even when  antigen-specific T cells were present at low starting frequencies (1-5%)  within the bulk population, showing potential for activating rare,  cognate T cells. To evaluate the generality of the pMHC-pseudotyping  approach, viruses bearing two different SCTs were shown to exhibit  similarly high specificity for their cognate T cells among off-target  cells in vitro.

A1-virus  carrying a gene encoding tethered murine IL-12 with downstream ZsGreen  (A1-mIL12 virus) was used to demonstrate the delivery of a therapeutic  cargo. The virus was confirmed to induce IL-12 expression in  antigen-specific T cells associated with STAT4 phosphorylation and IFNg  production in vitro. When TRP1high CD8 T cells were transduced ex vivo and injected into B12F10 melanoma-tumour inoculated mice, survival was  significantly prolonged relative to animals receiving untransduced  TRP1high T cells. Increased frequencies of antigen-specific T cells were  observed within tumours, and the proportion of these cells retaining  transgene expression (ZsGreen+) mirrored transduction frequencies  pre-transfer, demonstrating maintenance of gene expression in vivo.

When  A1-mIL12 virus was directly injected into tumour-bearing B6 mice  reconstituted with 1-5% TRP1high CD8s, survival was improved compared to  that of A1-ZsGreen or Eco-mIL-12 virus-treated mice, demonstrating the  need for gene targeting to tumour-specific cells for therapeutic  efficacy.   Survival  was not significantly increased by  co-administration of A1-mIL12 virus with anti-PD1 antibody.  Antigen-specific T cell transduction, activation and expansion was  achieved in vivo, accompanied by  intra-tumoural IFNg expression and MHC II upregulation in macrophages.  In a further cohort of mice receiving an increased viral dose and  monitored until day 40, CD44+ CD62L- effector-memory phenotype  transduced cells were detected in some animals, suggesting generation of  long-lived anti-tumour responses by engineered T cells in vivo.


Limitations

  • Compared  to virus displaying A1 single-chain trimers, the transduction  efficiencies achieved with the two other single-chain  trimers-pseudotyped viruses appeared notably lower (Figure 2C, 2D).  Hence, although pMHC-pseudotyped viruses can be readily adapted to  target different TCRs, transduction efficiencies may vary greatly  depending on peptide-MHC and pMHC - TCR affinity, or other unelaborated  factors. This may impede development of pMHC-pseudotyped viruses against  certain cognate TCRs.

  • Analysis  of the expression of tethered mIL-12 versus the downstream ZsGreen  reporter in the A1-mIL12 virus suggests that ZsGreen is expressed in a  lower proportion of cells than mIL-12 (Figure 3A). This may be due to  the internal ribosomal entry site (IRES) enabling only relatively  inefficient ZsGreen expression. Use of a 2A ribosomal skipping sequence  in place of the IRES may improve ZsGreen expression and have the added  benefit of being shorter, which could improve viral packaging.  Inefficient ZsGreen expression may have led to underestimation of the  true level of transduction of TRP1high CD8 T cells in mice.

  • In  the cohort of mice that received a high dose of virus, although  treatment with the A1-mIL12 virus significantly improved survival  relative to control groups, there was a trend for an initial drop in  survival in the A1-mIL-12-treated group before day 15 post tumour  inoculation, when survival began to decline in the PBS-only group. This  may indicate some form of toxicity, possibly caused by potent induction  of IFNg. Careful dosing will need to be considered to balance possible  acute toxicity versus long-lasting effector T cell functions.


Novelty and significance

Tumour-infiltrating  lymphocyte therapy (TIL), in which autologous T cells are isolated from  tumour biopsies, expanded, then reintroduced into patients, is hampered  by T cell exhaustion caused by intra-tumoural antigen exposure and long  in vitro T cell expansion regimes. To overcome the drawbacks of ex vivo T cell expansion and engineering, gene delivery to T cells in vivo offers an attractive alternative. mRNA-carrying lipid nanoparticles  displaying pMHCs have been used to target cognate T cells, but result in  only transient mRNA expression that may not enable sustained  anti-tumour activity. pMHC-pseudotyped lentiviral gene delivery has  previously been shown to stably transduce cognate T cells in vitro;  but the novelty in this preprint lies in demonstrating that this  approach is able to target long-lasting expression of therapeutic cargo  in specific cognate T cells in vivo.  This method of cargo delivery streamlines otherwise labour-intensive  and time-consuming manufacturing processes in TIL production, downsides  often seen as major bottlenecks in adoptive cell transfer therapies.  While the authors have selected tethered mIL-12 as an anti-tumour  therapeutic cargo, pMHC-pseudotyped viruses can be applied to a range of  diseases requiring antigen-specific gene delivery and could  significantly improve the precision and quality of cell therapy  products.


Credit

Reviewed by Hugo Kwong as  part of a cross-institutional journal club between the Icahn School of  Medicine at Mount Sinai, the University of Oxford, the Karolinska  Institute, the University of Toronto and the University of Texas MD  Aderson Cancer Center.


The author declares no conflict of interests in relation to their involvement in the review.

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