Latest Preprint Reviews

Mapping the nanoscale organization of the human cell surface proteome reveals new functional associations and surface antigen clusters

Floyd et al. (BioRxiv) DOI: 10.1101/2025.02.12.637979

Control of Inflammatory Response by Tissue Microenvironment

Wu et al. (BioRxiv)

DOI: 10.1101/2024.05.10.592432

The immunometabolic topography of tuberculosis granulomas governs cellular organization and bacterial control

McCaffrey, E.F. & Delmastro, A.C. et al. (BioRxiv) DOI: 10.1101/2025.02.18.638923

Likely circulation of a coronavirus in roe deer
populations suggested by SARS-CoV-2 serological investigation in France

Perez et al 2025. (BioRxiv) DOI: 10.1101/2025.02.19.639030

Microbial metabolism of food allergens determines the severity of IgE-mediated anaphylaxis

Sánchez-Martínez et al. (BioRxiv) DOI: 2025.02.17.638013v1

Submicron-Sampling of Living Cells by Macrophages

Fan et al. (BioRxiv) DOI:10.1101/2025.04.10.648051

A microenvironment-driven, HLA-II-associated insulin neoantigen elicits persistent memory T cell activation in diabetes

Srivastava et al. (BioRxiv)

DOI:10.1101/2024.11.07.622538

IL-25-induced memory ILC2s mediate long-term small intestinal adaptation

Cortez et al. (BioRxiv) DOI: 10.1101/2025.03.25.645270

A pan-cancer atlas of T cell targets

Li, G. et al (BioRxiv) DOI: 10.1101/2025.01.22.634237

Neoantigens drive adoptively transferred CD8 T cells to long-lived effectors mediated by lymph node trafficking

https://doi.org/10.1101/2025.04.18.649565doi

The phagosome-mediated anti-bacterial immunity is governed by the proton-activated chloride channel in peritoneal macrophages

Cheng et al. (BioRxiv) DOI: 10.1101/2025.02.27.640612

Functional memory T cells are derived from exhausted clones and expanded by checkpoint blockade

Raposo, C.J. et al. (BioRxiv) DOI: 10.1101/2025.02.10.637523

Poxvirus attack of anti-viral defense pathways unleashes an effector-triggered NF-κB response

BC Remick et al., (bioRxiv) DOI: 10.1101/2025.03.04.641538

Monocyte control of organismal energy homeostasis

Martins*, Blankehaus* et al. (BioRxiv) DOI: 10.1101/2025.02.20.639373

Androgen Signaling in Type 2 Innate Lymphoid Cells Drives Sex Differences in Helicobacter-Induced Gastric Inflammation and Atrophy

Duncan et al. (BioRxiv) DOI:10.1101/2025.03.14.643321

CDKN2ALow cancer cells outcompete macrophages for microenvironmental zinc to drive immunotherapy resistance.

Buj et al. (BioRxiv) DOI: 10.1101/2025.02.08.637227

Chronic Viral Reactivation and Associated Host Immune Response and Clinical Outcomes in Acute COVID-19 and Post-Acute Sequelae of COVID-19

Maguire et al. (BioRxiv) DOI: 10.1101/2024.11.14.622799

Lymph nodes link sex-biased immune aging to compromised antigen recognition

Menzel et al. (BioRxiv) DOI: 10.1101/2025.02.11.637693

Type 1 interferons induced upon respiratory viral infection impair lung metastatic initiation

Farais et al. (BioRxiv) DOI: 10.1101/2024.12.23.630113

Tumor-associated macrophages enhance tumor innervation and spinal cord repair

Dolci et al. (BioRxiv) DOI: 10.1101/2024.12.19.629374

Resident Tissue Macrophages Govern Intraocular Pressure Homeostasis

Liu et al. (BioRxiv) DOI: 10.1101/2025.01.25.634888

Type 1 lymphocytes and interferon-γ accumulate in the thalamus and restrict seizure susceptibility after traumatic brain injury

Mroz et al. (BioRixv) DOI:10.1101/2024.12.28.630606

Memory-Phenotype Ly49+ CD8 T emerging from the thymus develop into two subsets with distinct immune functions

Laubreton et al. (BioRxiv) DOI: 10.1101/2024.12.10.627689

BLOC1S1 control of vacuolar organelle fidelity modulates TH2 cell immunity and allergy susceptibility

Sharma et al. (BioRxiv) DOI: 10.1101/2024.03.21.586144

Macrophages orchestrate elimination of Shigella from the intestinal epithelial cell niche via TLR-induced IL-12 and IFN-γ

Eislmayr et al. (BioRxiv) DOI:10.1101/2025.01.20.633976

Discovery of a Potent and Selective Inhibitor of Human NLRP3 with a Novel Binding Modality and Mechanism of Action

Wilhelmsen et al. (BioRxiv) DIO: 10.1101/2024.12.21.629867

IL-10 Targets IRFs to Suppress IFN and Inflammatory Response Genes by Epigenetic Mechanisms

Bikash Mishra et al. (BioRxiv) DOI: 10.1101/2024.11.07.622491

Lymph Node Fibroblast Phenotypes and Immune Crosstalk Regulated by Podoplanin Activity

Makris et al. (BioRxiv) DOI: 10.1101/2022.12.01.518753

Dietary Restriction Enhances CD8⁺ T Cell Ketolysis to Limit Exhaustion and Boost Anti-Tumor Immunity

Oswald B.M. et al. (BioRxiv) DOI: 10.1101/2024.11.14.621733

Early life RSV infection as a preventable risk factor for asthma

De Leeuw et al., Research Square , DOI: 10.21203/rs.3.rs-5366915

Interferon Epsilon Protects Epithelial Barriers from Viral Infection through Autocrine
Intracellular Signaling

Casazza et al.. (BioRxiv) DOI: 10.1101/2024.11.15.623843

Peptide-MHC-targeted retroviruses enable in vivo expansion and gene delivery to tumor-specific T cells

Xu et al. (BioRxiv). DOI: 10.1101/2024.09.18.613594

Immunopeptidomics informs discovery and delivery of Mycobacterium tuberculosis MHC-II antigens for vaccine design

Leddy et al. (BioRxiv) DOI: 10.1101/2024.10.02.616386

Multi-Omics Atlas-Assisted Discovery of Transcription Factors for Selective T Cell State Programming

Kay-Chung et al. (BioRxiv) DOI:10.1101/2023.01.03.522354

A lymphoid tissue chemokine checkpoint prevents loss of CD8+ T cell functionality

Altenburger, LM. et al. (BioRxiv) DOI: 10.1101/2024.09.19.613830

Microbiota-induced plastic T cells enhance immune control of antigen-sharing tumors

Najar et al. (BioRxiv) DOI:10.1101/2024.08.12.607605

Monocyte-derived cells but not Microglia cause Oxidative Tissue Damage in Neuroinflammation

Villar-Vesga et al. (BioRxiv) DOI: 10.1101/2024.09.18.612891

PD-1 controls differentiation, survival, and TCR affinity evolution of stem-like CD8+ T cells

Hor et al. (BioRxiv) DOI: 10.1101/2024.08.02.606241

Synaptic synergy of T cell receptor and interleukin 2 receptor in CD8+ T cells

Capera et al. (BioRxiv) DOI: 10.1101/2024.08.13.607831

Androgen Signaling Restricts Glutaminolysis to Drive Sex-Specific Th17 Metabolism

Chowdhury et al. (BioRxiv) DOI: 10.1101/2023.02.10.527741

Tuft cell IL-17RB restrains IL-25 bioavailability and reveals context-dependent ILC2 hypo proliferation

Feng X et al. (BioRxiv) DOI:10.1101/2024.03.04.583299

Microbiota-derived inosine programs protective CD8+ T cell responses against influenza in newborns

Stevens et al. (BioRxiv) DOI:10.1101/2024.04.09.588427

Plasmacytoid dendritic cells are dispensable or detrimental in murine systemic or resiratory viral infections

Ngo C. et al. (BioRxiv) DOI:10.1101/2024.05.20.594961

B cell-mediated antigen presentation promotes adverse cardiac remodeling in chronic heart failure

Lovell et al. (BioRxiv) DOI:10.1101/2024.05.08.593153

Inhibition of NFAT promotes loss of tissue resident uterine natural killer cells and attendant pregnancy complications in humans

Asiimwe et al. (BioRxiv) DOI: 10.1101/2024.03.07.583906

Epigenetic signature and key transcriptional regulators of human antigen-specific type 1 regulatory T cells

Alma-Martina Cepika, et al. (BioRxiv) DOI: 10.1101/2024.03.07.582969

Arp2/3 complex-dependent actin regulation protects the survival of tissue-resident mast cells.

Kaltenbach et al. (BioRxiv) DOI:10.1101/2024.02.23.581763

Low Avidity T cells drive endogenous tumor immunity in mice and humans

Singhaviranon et al. (Research Square) DOI: 10.21203/rs.3.rs-3903457/v1

Breast Cancer Macrophage Heterogeneity and Self-renewal are Determined by Spatial Localization

Ben-Chetrit et al. (BioRxiv) DOI:10.1101/2023.10.24.563749

CD4+ TRM sustain the chronic phase of auto-immune neuroinflammatory disease

Pignata et al. (BioRxiv) DOI:10.1101/2024.03.26.586880

Granzyme B-based CAR T cells block metastasis by eliminating circulating tumor cells

Bin Sun, et.al. (BioRxiv) DOI: 10.1101/2024.03.18.585442

CAR-engineered lymphocyte persistence is governed by a FAS ligand/FAS auto-regulatory circuit

Yi et al. (BioRxiv) DOI:10.1101/2024.02.26.582108

Interleukin-1 receptor antagonist is a conserved driver of tuberculosis

Kotov. et al. (BioRxiv) DOI: 10.1101/2023.10.27.564420

Opposing effects of pre-existing antibody and memory T cell help on the dynamics of recall germinal centers

Schiepers A. et al. (BioRxiv) DOI: 10.1101/2023.12.15.571936

CD39 is expressed on functional effector and tissue resident memory CD8+ T cells

Isaacs, JF et al. (BioRxiv) DOI: 10.1101/2024.03.15.585252v1

Microbiota encoded fatty-acid metabolism expands tuft cells to protect tissues homeostasis during Clostridioides difficile infection in the large intestine

Kellogg et al. (BioRxiv) DOI: 10.1101/2024.01.29.574039

Host-derived oxidized phospholipids initiate effector-triggered immunity fostering lethality upon microbial encounter.

Di Gioia et al. (BioRxiv) DOI: 10.1101/2023.11.21.568047

Cytotoxic CD4+ T cells in the bone marrow compromise healthy ageing by enhancing granulopoiesis

Enrique Gabamdé-Rodrigez, Gonzalo Soto-Heredero, et al. (BioRxiv) DOI: 10.1101/2024.01.26.577360

IQGAP2 regulates blood-brain barrier immune dynamics

Katdare KA et al. (BioRxiv) DOI: 10.1101/2023.02.07.527394

Tuft cell derived acetylcholine is an effector of type 2 immunity and directly targets helminth parasites in the gut lumen.

Ndjim M. et al. (BioRxiv) DOI: 10.1101/2023.12.08.570757

Cancer immunotherapy responses persist after lymph node resection

Zhou H et al. (BioRxiv) DOI: 10.1101/2023.09.19.558262

Lymphatic vessel transit seeds precursors to cytotoxic resident memory T cells in skin draining lymph nodes

Heim, et al. (BioRxiv) DOI: 10.1101/2023.08.29.555369

Convergent evolution of monocyte differentiation in adult skin instructs Langerhans cell identity

Appios A, Daview J, Sirvent S, et al. (BioRxiv) DOI: 10.1101/2023.11.13.566862

Interpretable inflammation landscape of circulating immune cells

Jimenez-Gracia et al. (BioRxiv) DOI: 10.1101/2023.11.28.568839

Monocyte-derived microglia with Dnmt3a mutation cause motor pathology in aging mice

Kim et al. (BioRxiv) DOI:10.1101/2023.11.16.567402

A Specialized Epithelial Cell Type Regulating Mucosal Immunity and Driving Human Crohn’s Disease

Li et al. (BioRxiv) DOI: 10.1101/2023.09.30.560293

Single cell analysis uncovers striking cellular heterogeneity of lung infiltrating Tregs during eosinophilic vs. neutrophilic allergic airway inflammation

Iamsawat et al. (BioRxiv) DOI: 10.1101/2023.09.23.559152

CD163 and Tim-4 identify resident intestinal macrophages across sub-tissular regions that are spatially regulated by TGF-β

Prise I.E. et al. (BioRxiv) DOI: 10.1101/2023.08.21.553672

Tumor-wide RNA splicing aberrations generate immunogenic public neoantigens

Kwok D.W. et al. (BioRxiv) DOI: 10.1101/2023.10.19.563178

An “alert state” ribosome population acts as a master regulator of cytokine-mediated processes

Dopler et al. (BioRxiv) DOI: 10.1101/2023.10.17.562425

Iron is critical for mucosal-associated invariant T cell metabolism and effector functions.

Eimear R. et al. (Research Square) DOI: 10.21203/rs.3.rs-3358434/v1

A spatial human thymus cell atlas mapped to a continuous tissue axis

Yayon*, Kedlian*, Boehme* et al. (BioRxiv) DOI: 10.1101/2023.10.25.562925

Immune landscape of tertiary lymphoid structures in hepatocellular carcinoma (HCC) treated with neoadjuvant immune checkpoint blockade

Shu D.H. et al. (BioRxiv) DOI: 10.1101/2023.10.16.562104

Multimodal profiling of peripheral blood identifies proliferating circulating effector CD4+ T cells as predictors for response to integrin α4β7-blocking therapy in patients with inflammatory bowel disease

Horn V. et al. (BioRxiv) DOI: 10.1101/2023.10.01.560386

Maternal IL-10 restricts fetal emergency myelopoiesis

Collins A. et al. (BioRxiv) DOI: 10.1101/2023.09.13.557548

Murine classical monocyte subsets display distinct functions and fates

Trzebanski et al. (BioRxiv) DOI: 10.1101/2023.07.29.551083

Commensal myeloid crosstalk in neonatal skin regulates long-term cutaneous type 17 inflammation

Dhariwala M.O. et al. (BioRxiv) DOI:10.1101/2023.09.29.560039

Adipocytes regulate fibroblast function, and their loss contributes to fibroblast dysfunction in inflammatory diseases

Faust H. et al. (bioRxiv) DOI: 10.1101/2023.05.16.540975

TAPIR: a T-cell receptor language model for predicting rare and novel targets.

Fast et al. (BioRxiv) DOI: 10.1101/2023.09.12.557285

Bacterial Sphingolipids Exacerbate Colitis by Inhibiting ILC3-derived IL-22 Production

Bao, B. et al. (BioRxiv) DOI: 10.1101/2023.09.05.555400

HIF-1α-mediated mitochondrial-glycolytic reprogramming controls the transition of precursor to terminally exhausted T cells

Wu et al. (BioRxiv) DOI: 10.1101/2023.08.31.555662

Human inborn errors of long-chain fatty acid oxidation show impaired inflammatory responses to TLR4-ligand LPS

Mosegaard S. et al. (BioRxiv) DOI: 10.1101/2023.08.30.555512

Temporal profiling of human lymphoid tissues reveals coordinated defence to viral challenge

Coates M.L. et al. (BioRxiv) DOI: 10.1101/2023.09.15.558006

The tissue-resident regulatory T cell pool is shaped by transient multi-tissue migration and a conserved residency program

Burton O*, Bricard O* et al. (BioRxiv) DOI: 10.1101/2023.08.14.553196

Homeostatic, repertoire and transcriptional relationships between colon T regulatory cell subsets.

Ramanan D. et al. (BioRxiv) DOI: 10.1101/2023.05.17.541199

Memory Th1 cells modulate heterologous diseases through innate function.

Rakebrandt*, Yassini* et al. (BioRxiv) DOI: 10.1101/2023.03.22.533799

T:B cell communication in ectopic lymphoid follicles in CNS autoimmunity

Kolz A. et al. (bioRxiv) DOI:10.1101/2023.06.01.543004

Pannexin-1 channels promote CD8+ T cell effector and memory responses through distinct intracellular pathways

Trupti Vardam-Kaur et al. (BioRxiv) DOI: 10.1101/2023.04.19.537580

Group 2 innate lymphoid cells constrain type 3/17 lymphocytes in shared stromal niches to restrict liver fibrosis

Sbierski-Kind*, Cautivo* et al. (Biorxiv) DOI: 10.1101/2023.04.26.537913

Universal recording of cell-cell contacts in vivo for interaction-based transcriptomics

Nakandakari-Higa et al. (BioRxiv) DOI: 10.1101/2023.03.16.533003

Glioblastoma induces the recruitment and differentiation of hybrid neutrophils from skull bone marrow

Lad BM et al. (BioRxiv) DOI:10.1101/2023.03.24.534105

Perforin-2 is a pore-forming effector of endocytic escape in cross-presenting dendritic cells

Rodríguez-Silvestre et al. (BioRxiv) DOI: 10.1101/2023.01.31.525875

Antigen-presenting type-I conventional dendritic cells facilitate curative checkpoint blockade immunotherapy in pancreatic cancer

Mahadevan K.K. et al. (BioRxiv) DOI: 10.1101/2023.03.05.531191

Unstable EBV latency drives inflammation in multiple sclerosis patient derived spontaneous B cells

Soldan S. et al. (Research Square) DOI: 10.21203/rs.3.rs-2398872/v1

Tregs constrain CD8+ T cell priming required for curative intratumorally anchored anti-4-1BB immunotherapy

Palmeri J.R. et al. (BioRxiv) DOI:10.1101/2023.01.30.526116

A Novel MHC-Independent Mechanism of Tumor Cell Killing by CD8+ T Cells

Lerner*, Woroniecka* et al. (BioRxiv). DOI: 10.1101/2023.02.02.526713

A Distinct Phenotype of Polarized Memory B Cell holds IgE Memory

Koenig, J. et al. (BioRxiv) DOI: 10.1101/2023.01.25.525495

Sexual dimorphism in obesity is governed by RELMα regulation of adipose macrophages and eosinophils

Li, J. et al. (BioRxiv) DOI: 10.1101/2023.01.13.523880

A conserved family of immune effectors cleaves cellular ATP upon viral infection

Rousset, F et al. (BioRxiv) DOI: 10.1101/2023.01.24.525353

Synthetic STING agonists elicit powerful vaccine adjuvancy providing robust central memory and anti-tumor effects

Towner et al. (BioRxiv) DOI: 10.1101/2023.01.04.522614