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A microenvironment-driven, HLA-II-associated insulin neoantigen elicits persistent memory T cell activation in diabetes

22 maj 2025

Srivastava et al. (BioRxiv) 

DOI:10.1101/2024.11.07.622538

Keywords

  • Type 1 diabetes

  • Memory T cells

  • Autoimmunity

  • Diabetes neoantigen


Main Findings

Type  1 diabetes (T1DM) is a chronic condition caused by the progressive  immune-mediated destruction of insulin-producing pancreatic β-islets.  Although T cells are thought to significantly contribute to disease  pathology, the nature of the immunostimulatory β-cell antigens, as well  as how and where these antigens originate in the pancreas remains  unclear. In this preprint, the authors applied a β-cell degranulation  assay and HLA-II immunopeptidomics to identify potential islet-derived  neonatigens that may be associated with the development of type 1  diabetes. To accomplish this, the authors recruited both non-diabetic  (ND) individuals and diabetic patients who had been diagnosed either 3  or 18 months earlier. All participants underwent a mixed-meal tolerance  test (MMTT), which involved fasting for 8 hours followed by consuming a  carbohydrate-rich nutritional drink. The authors reasoned that the use  of a MMTT would allow peptides from pancreatic β-cells to be released  into the circulation, bind to HLA-II on circulating APCs. Through such a  process the authors anticipated the discovery of pancreatic neoantigens  via HLA-II-associated immunopepidomics. Curiously, along with native  insulin B-chain peptides, the authors identified a previously  unidentified modification of the insulin B-chain that was associated  with HLA-II only following the MMTT, which contained a cysteine to  serine transformation at the 19thamino acid (insulin C19S). Analysis of  the murine immunopeptidomcis following glucose exposure revealed that  the insulin C19S antigen is conserved across species and associated with  mouse MHCII.

The  authors then asked whether the insulin C19S peptide associates with  disease progression in non-obese diabetic (NOD) mice, known for their  spontaneous development of diabetes with age. To do this, the authors  first generated C19S-specific T cell hybridomas (termed S5 T cells),  which they verified to be specific to the C19S insulin peptide, but not  native insulin. Then, pancreatic islet lysates from 5-week-old NOD mice  (non-diabetic) and 17-week-old NOD mice (diabetic) were used to  stimulate S5 T cells and assay the degree of T cell autoreactivity by  IL-2 secretion. Interestingly, diabetic NOD mouse islets induced a  greater degree of S5 T cell proliferation compared to non-diabetic NOD  mice. Furthermore, antigenic ex vivo recall experiments and ELISPOTs analyses showed that C19S-specific T  cells have a greater propensity to secrete IFN𝛾 relative to native  insulin-specific T cells. Taken together, these data indicate that the  C19S peptide is associated with diabetes disease progression.

In a  separate set of experiments, the authors used the reactivity of S5 T  cells to C19S to examine the precise location of the neoantigenic  peptide within pancreatic β-cells, and the environmental conditions  required for its synthesis. Indeed, the authors found that the C19S  insulin neoantigen appears following a synergy of endoplasmic reticulum  and oxidative stress that can occur in response to inflammatory cytokine  signalling and primarily localizes within islet crinosomes.

The  study then assessed the transcriptional and functional profiles of  C19S-specific T cells to provide potential clues as to how this  neoantigen may contribute to disease progression. A scRNA-sequencing  based comparison of C19S-specific T cells to native insulin-specific T  cells isolated from NOD mice lymph nodes indicated that the neoantigen  specific T cells displayed higher transcriptional signatures of T cell  activation and memory relative to native insulin-specific T cells.

Further experiments involving the adoptive transfer of C19S-specific T cells into NOD.Rag1-/-mice indicated that these cells are sufficient to induce diabetes in mice. Comparison of WT NOD and NOD.Tnfsf1a/1b-/- mice indicated that the heightened inflammatory activation and memory  phenotype of C19S-specific T cells is dependent on inflammatory cytokine  signalling.

The  authors conclude their study by performing a series of impactful  experiments using human patient samples. First, by utilizing human  islets, crinosome fractionation, and crinosome peptidomics, the authors  verify that the C19S peptide is localized within islet crinosomes in  humans, and that its presence is induced following endoplasmic reticulum  and oxidative stress, or following stimulation with pro-inflammatory  cytokines such as TNF, IL-1β, and IFN𝛾.

Lastly,  the authors examine the numbers and profile of C19S neoantigen-reactive  T cells within PBMCs from non-diabetic, recent-onset, and established  diabetes patient. Interestingly, both recent-onset and established  diabetes populations have larger numbers of C19S reactive T cells than  the non-diabetic population. Furthermore, in diabetes, there are more  C19S-reactive T cells than there are native-insulin reactive T cells,  implicating the presence of the neoantigen-specific cells as indicative  of disease. Lastly, the C19S-specific T cells display a greater  activated memory phenotype, and a lower propensity toward regulatory T  cell phenotypes than native insulin-specific T cells in patients.


Limitations

The  authors may consider commenting on why non-diabetic human islets produce  the insulin C19S neonatigenic peptide, yet do not have as many  C19S-specific T cells as the diabetic cohorts.

·  The authors may consider examining whether the administration of  antioxidants to NOD mice decreases the rate of disease development, or  the ameliorates the pathology of disease.

One  wonders whether the neoantigen or the degree of the β-cell associated  stress are critical in causing the break in tolerance to insulin. Would  over expression of the neoantigen be sufficient to trigger T1D.  Delineating whether neoantigen or stress cooperate in T1D onset would be  a major addition to this already significant finding.


Significance/Novelty

The  preprint reveals that oxidative stress in pancreatic islets modifies  insulin (C19S), creating a neoantigen that activates memory T cells in  type 1 diabetes. Presented by HLA-DQ8, these cells persist, sustaining  autoimmunity. Targeting oxidative antigen remodeling offers a novel  strategy to modulate chronic immune responses in diabetes therapy.

This  study shows how oxidative stress alters islet self-antigens, fuelling  chronic autoimmunity. The study provides intriguing avenues toward  targeting insulin neoantigen formation which could slow type 1 diabetes  progression. This discovery shifts focus from immune suppression to  precision strategies that block disease-driving antigen remodelling,  offering new avenues for treatment and immune modulation.


Credit

Reviewed by Boyan Tsankov as part of a cross-institutional journal club between the Icahn School  of Medicine at Mount Sinai, the University of Oxford, the Karolinska  Institute the University of Toronto, and MD Anderson Cancer Centre.


The author declares no conflict of interests in relation to their involvement in the review.

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